PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G103300.1
Common NameB456_001G103300, LOC105790653
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 519aa    MW: 56552.3 Da    PI: 7.3597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G103300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.6e-09325372455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Gorai.001G103300.1 325 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 372
                         8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.34E-10319376No hitNo description
SuperFamilySSF474597.33E-17319390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428321371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16321389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6325372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MENQFFLGAQ GPPLDFGQSL SSPLSTAWQS LSSPMEIQAT ELNSTDYGLQ FESALSSMVS  60
SPVASNSNLS NESFMIRELI GKLGSIGGNS GEISPQPLIA NSTNTSCYST PLNSPPKLSL  120
PLNTLVKEKL PRLGKSMGMN ASVTDFSADP GFAERAAKFS CFGSRSFNGR TSQLGLNDTS  180
SPSPSLSPYR SNPLSSNRKI PRVSSSPSLN AMVIEPLQDR SELSHSQEES SITNGDPSLK  240
PSKGTNSRKR KTVPKAKTNE ISTSPSTNAP KGTESNEKRC KSTESNGNQN DSIKTEDDAK  300
GNTKPPEPPK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQNLVPG CNKVTGKALM  360
LDEIINYVQS LQRQVEFLSM KLASVNTRLD FNMDGLMPKE MFESNNSLAH QIFPMDSSAT  420
AIFEQQNPAL HHHHANMSNG TMSQCLVGQL DTSIHPNLNT HLPQIHHFTP SMPQYPAFCE  480
GDLQTIVEMG LGQNQSREMA LQSEFQGSNQ VSQMKVEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251SRKRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473818.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A0D2PPK70.0A0A0D2PPK7_G
STRINGPOPTR_0002s24990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-105bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]